Visit to Akutsu Laboratory
at
Kyoto University Bioinformatics Center

Date

2009 April 23rd

Venue

Kyoto University, Uji, Kyoto 611-0011, Japan Bioinformatics Center, Institute for Chemical Research, 3F, Seminar Room CB316.

Access

Participants (Alphabetical)

Tatsuya Akutsu Bioinformatics Center, Kyoto University, Japan
Gauvain Bourgne National Institute of Informatics, Japan
J.B.Brown Bioinformatics Center, Kyoto University, Japan
Petr Buryan Czech Technical University, Czech
Andrei Doncescu LAAS-CNRS, France
Morihiro Hayashida Bioinformatics Center, Kyoto University, Japan
Katsumi Inoue National Institute of Informatics, Japan
Yuki Kato Bioinformatics Center, Kyoto University, Japan
Hiroshi Mamitsuka Bioinformatics Center, Kyoto University, Japan
Unyanee Poolsap Bioinformatics Center, Kyoto University, Japan
Yusuke Sakuma Bioinformatics Center, Kyoto University, Japan
Takehide Soh The Graduate University for Advanced Studies, Japan
Gabriel Synnaeve TIMC-IMAG, France
Takeyuki Tamura Bioinformatics Center, Kyoto University, Japan
Yoshitaka Yamamoto University of Yamanashi, Japan
Yang Zhao Bioinformatics Center, Kyoto University, Japan

Programme

Session 1: Hypothesis finding in Systems Biology
13:00 - 13:40 K. Inoue:
"Evaluating Abductive Hypotheses using an EM Algorithm on BDDs" [Abstract]
13:40 - 14:20 A. Doncescu:
"Cancer Diagnosis by Abductive Reasoning" [Abstract]
(10 minutes Break)
Session 2: Tour of laboratories
14:30 - 15:20 "Tour the Laboratories in the Bioinformatics Center"
Session 3: Metabolic Pathway Modeling
15:30 - 16:00 Y. Yamamoto:
"A Logical Modeling on Dynamic Transitions of the High Flux Backbone in Metabolic Pathways"[Abstract]
16:00 - 16:30 G. Synnaeve:
"Dealing with Numerical Values in Logic Modeling" [Abstract]
16:30 - 17:00 T. Soh:
"A SAT-based Approach for Analyzing Biochemical Pathways" [Abstract]
(10 minutes Break)
Session 4: Gene Network & Algorithms
17:10 - 17:40 P. Buryan:
"ILP and Grammatical Evolution" [Abstract]
17:40 - 18:10 G. Bourgne:
"Automatic Design of Experimental Plans" [Abstract]

Contact

Takehide Soh: soh at nii.ac.jp

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Webmaster: Takehide Soh (E-mail soh at nii.ac.jp)