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ChemoJunMoleculeViewer

ChemoJun050 (2006/08/08) Copyright 2002-2006 National Institute of Informatics, Research Organization of Information and Systems.

superclass:

instance variables:

class instance variables:

class variabels:

pool variabels:

instance methods:

  1. asGraph [converting]
  2. asGrapher [converting]
  3. atomConnections [accessing]
  4. atomConnectionsDo: aBlock [enumerating]
  5. atomObjects [accessing]
  6. atomObjectsAndIndexesDo: aBlock [enumerating]
  7. atomObjectsDo: aBlock [enumerating]
  8. beInvisibleCameraButton [buttons]
  9. beVisibleCameraButton [buttons]
  10. browseManual [menu messages]
  11. cameraButton [buttons]
  12. cameraButtonSpecWrapper [buttons]
  13. cameraButtonView [interface opening]
  14. clickAt: mouse2dPoint [actions]
  15. cloneViewer [private]
  16. computeDisplayInformationInView: aView [private]
  17. computeDisplayOffsetFor: atomObject [private]
  18. computeDisplayOffsetFor: atomObject fromAtom: fromAtom toAtom: toAtom inView: aView [private]
  19. computeDisplayOffsetsInView: aView [private]
  20. computeModifierDisplayInformationInView: aView [private]
  21. computeOffsetOfModifier: atomObject fromAtom: fromAtom toAtom: toAtom inView: aView [private]
  22. computeOffsetOfSerialNumber: atomObject fromAtom: fromAtom toAtom: toAtom inView: aView [private]
  23. computeSerialNumberDisplayInformationInView: aView [private]
  24. convertModifierStringToImage: aString focusAtomIndex: anIndex [private]
  25. defaultBaseName [defaults]
  26. defaultColorOfSerialNumber [defaults]
  27. defaultDisplayOffsetLength [defaults]
  28. defaultEyePoint [defaults]
  29. defaultMessageSymbol [defaults]
  30. defaultMinimumBoxOfSerialNumber [defaults]
  31. defaultMoleculeObjectClass [defaults]
  32. defaultMolFileReaderClass [defaults]
  33. defaultString [defaults]
  34. defaultStyleOfSerialNumber [defaults]
  35. defaultUpVector [defaults]
  36. defaultWindowLabel [defaults]
  37. displayInformationInView: aView [displaying]
  38. displayModifierInView: aView [displaying]
  39. displayObject [accessing]
  40. displaySerialInView: aView [displaying]
  41. displaySuperimposeInView: aView [displaying]
  42. exceptHydrogen [accessing]
  43. exceptHydrogen: aBoolean [accessing]
  44. exceptIndex [accessing]
  45. exceptIndex: aBoolean [accessing]
  46. fileName [accessing]
  47. flushDisplayAttributes [flushing]
  48. flushDisplayObject [flushing]
  49. flushModifierAttributes [flushing]
  50. flushSerialNumberAttributes [flushing]
  51. focus: aRectangle1 to: aRectangle2 [manipulating]
  52. grab: deltaPoint [manipulating]
  53. grab: from2dPoint xy: to2dPoint [manipulating]
  54. hasModifier: atomObject [testing]
  55. highResolution [menu messages]
  56. informationString [accessing]
  57. initialize [initialize-release]
  58. is2d [testing]
  59. is3d [testing]
  60. isMoleculeViewer [testing]
  61. lowResolution [menu messages]
  62. mediumResolution [menu messages]
  63. messageSymbol [accessing]
  64. messageSymbol: aSymbol [accessing]
  65. modifierImage: atomObject [accessing modifiers]
  66. modifierImage: atomObject fromAtom: fromAtom toAtom: toAtom inView: aView [accessing modifiers]
  67. moleculeFromReader: aReader [menu messages]
  68. moleculeObject [accessing]
  69. moleculeObject: aMolecule [accessing]
  70. moleculeText [accessing]
  71. numberOfAtoms [accessing]
  72. openMolecule [menu messages]
  73. postBuildWith: aBuilder [interface opening]
  74. saveAsFile [menu messages]
  75. saveFileTo: moleculeFilename [menu messages]
  76. serialNumberComposedText: atomObject [accessing]
  77. setIndexExpression: aString setIndexExpressionBlock: aBlock [private]
  78. setWindowLabel [interface opening]
  79. showMoleculeAsBallAndStick [menu messages]
  80. showMoleculeAsPlane [menu messages]
  81. showMoleculeAsSpaceFill [menu messages]
  82. showMoleculeAsStick [menu messages]
  83. showMoleculeAsStickAndSpaceFill [menu messages]
  84. toggleHydrogen [menu messages]
  85. toggleIndex [menu messages]
  86. updateMiscMenuIndication [menu accessing]
  87. updateStringHolder: aPoint [updating]
  88. updateViewMenuIndication [menu accessing]
  89. wheelActionInTopCenterBox: wheelUpBoolean [wheel actions]

class methods:

  1. copyright [copyright]
  2. defaultExceptSerialNumber [defaults]
  3. defaultMoleculeObjectClass [defaults]
  4. defaultMolFileReaderClass [defaults]
  5. example1 [examples]
    ChemoJunMoleculeViewer example1.
  6. example2 [examples]
    ChemoJunMoleculeViewer example2.
  7. example3 [examples]
    ChemoJunMoleculeViewer example3.
  8. example4 [examples]
    ChemoJunMoleculeViewer example4.
  9. example5 [examples]
    ChemoJunMoleculeViewer example5.
  10. example6 [examples]
    ChemoJunMoleculeViewer example6.
  11. fileName: moleculeFilename [instance creation]
  12. menuBar [resources]
    Tools.MenuEditor new openOnClass: self andSelector: #menuBar
  13. moleculeObject: moleculeObject [instance creation]
  14. system [copyright]
  15. version [copyright]
  16. windowSpec [interface specs]
    Tools.UIPainter new openOnClass: self andSelector: #windowSpec
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