The 2008-2011 JSPS Grant-in-Aid for Scientific Research (A)

Inference-based Hypothesis-finding and
its Application to Systems Biology

The 6th Meeting

Date

March 14-15, 2011

Venue

Nanki-Shirahama-Onsen Shirahama Gyoen
1011 Shirahama-cho, Nishimuro-gun, Wakayama, 649-2211, Japan
(Local Information)

Participants

Katsumi Inoue National Institute of Informatics, Japan
Taisuke Sato Tokyo Institute of Technology, Japan
Chiaki Sakama Wakayama University, Japan
Koji Iwanuma University of Yamanashi, Japan
Hidetomo Nabeshima University of Yamanashi, Japan
Yoshitaka Yamamoto University of Yamanashi, Japan
Andrei Doncescu LAAS-CNRS, France
Gauvain Bourgne National Institute of Informatics, Japan
Lena Wiese National Institute of Informatics, Japan
Johannes Oetsch Vienna University of Technology, Austria
Barthélémy Dworkin Université Paul Sabatier, France
Masakazu Ishihata Tokyo Institute of Technology, Japan
Toshiaki Hirohashi Tokyo Institute of Technology, Japan
Kenshiro Suzuki University of Yamanashi, Japan
Yuki Kidoku University of Yamanashi, Japan
Takumi Muramatsu University of Yamanashi, Japan
Takehide Soh The Graduate University for Advanced Studies, Japan

Programme


14th (Monday)

9:20 - 9:30 Opening
Session 1: Induction / Abduction
9:30 - 10:00 Survey of Inductive Methods based on Bottom and Top Theories
Katsumi Inoue
[slide]
10:00 - 10:30 Towards Pathway Completion on Glucose Repression by SOLAR
Yoshitaka Yamamoto
[slide]
10:30 - 11:00 Informative Answers for Horn Clause Theories and Conjunctive Queries
Lena Wiese* and Katsumi Inoue
11:00 - 11:30 Partition-based Consequence Finding in Biological Networks
Gauvain Bourgne* and Katsumi Inoue
[slide]
Session 2: Systems Biology
13:30 - 14:00 Hypothesis Finding on the p53 Pathway
Andrei Doncescu
[slide]
14:00 - 14:30 Predicting Gene Knockout Effects by Minimal Pathway Finding
Takehide Soh* and Katsumi Inoue
[slide]
Session 3: Probabilistic/Nonmonotonic Reasoning
14:30 - 15:00 On Testing Answer-set Programs
Tomi Janhunen, Ilkka Niemelä, Johannes Oetsch*, Jörg Pührer and Hans Tompits
[slide]
15:30 - 16:00 The Many Faces of Deception
Chiaki Sakama
[slide]
16:00 - 16:30 Evaluating Abductive Hypotheses using Logic-based Probabilistic Models with Bayesian Inference
Masakazu Ishihata
[slide]
16:30 - 17:00 On acyclic Bayesian networks (in Japanese)
Toshiaki Hirohashi
[slide]

15th (Tuesday)

Session 4: Theorem Proving
9:30 - 10:00 Equality Reasoning Based on Ordered Modification Method and Restart Connection Tableaux (in Japanese)
Koji Iwanuma
10:00 - 10:30 A SAT Solver based on SOL Tableau Calculus (Preliminary Report) (in Japanese)
Kenshiro Suzuki
[slide]
10:30 - 11:00 A Divide-and-Conquer Strategy for SOL Tableau Calculus (in Japanese)
Yuki Kidoku
[slide]
11:00 - 11:30 A Portfolio Strategy for the Consequence Finding System SOLAR (in Japanese)
Takumi Muramatsu
[slide]
11:30 - 12:00 Discussion

Contact

Chiaki Sakama


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Webmaster: Takehide Soh (E-mail soh at nii.ac.jp)