KUBIC-NII Joint Seminar on Bioinformatics 2014
organized by
Bioinformatics Center, Institute for Chemical Research, Kyoto University and
National Institute of Informatics

Date

Monday, November 17th, 2014.

Venue

Kyoto University, Uji, Kyoto 611-0011, Japan
Bioinformatics Center, Institute for Chemical Research,
3F, Seminar Room CB316.

Access

Participants (alphabetical)

Tatsuya Akutsu Institute for Chemical Research, Kyoto University, Japan
Alexander Andreychenko Saarland University, Germany
Maxime Folschette Institut de Recherche en Communications et Cybernétique de Nantes (IRCCyN), École Centrale de Nantes, France
Morihiro Hayashida Institute for Chemical Research, Kyoto University, Japan
Katsumi Inoue National Institute of Informatics, Japan
Jesper Jansson Institute for Chemical Research, Kyoto University, Japan
Liwei Liu Dalian Jiaotong University
Morgan Magnin Institut de Recherche en Communications et Cybernétique de Nantes (IRCCyN), École Centrale de Nantes, France
Kotaro Okazaki SONAR Co., Ltd. / The Graduate University for Advanced Studies (SOKENDAI), Japan
Tony Ribeiro The Graduate University for Advanced Studies (SOKENDAI), Japan
Taisuke Sato Tokyo Institute of Technology, Japan
Takeyuki Tamura Institute for Chemical Research, Kyoto University, Japan
Suguru Ueda National Institute of Informatics, Japan

Program

9:30 - 10:00 Opening
10:00-10:30 Concise Representations and Algorithms in Cooperative Game Theory
Suguru Ueda, Katsumi Inoue
10:30-11:00 Why Model-Checking is Significant for Biology?
Morgan Magnin
11:00-11:30 Perturbations and Recovery Costs in Biological Regulatory Networks with Process Hitting
Maxime Folschette, Morgan Magnin, Katsumi Inoue
11:30-12:00 On the Parameterized Complexity of Associative and Commutative Unification
Tatsuya Akutsu
12:00 - 13:30 Lunch
13:30-14:00 Generative CRFs
Taisuke Sato
14:00-14:30 Degree-Constrained Graph Orientation: Maximum Satisfaction and Minimum Violation
Jesper Jansson
14:30-15:00 On the Complexity of Finding a Largest Common Subtree of Bounded Degree
Takeyuki Tamura
15:00 - 15:30 Break
15:30-16:00 Resilient Properties for Biological Oscillatory Systems
Alexander Andreychenko, Morgan Magnin, Katsumi Inoue
16:00-16:30 Learning Delayed Influences of Biological Systems
Tony Ribeiro, Morgan Magnin, Katsumi Inoue, Chiaki Sakama
16:30-17:00 Lempel-Ziv Complexity to Construct Phylogenetic Tree
Liwei Liu
17:00-17:30 Proteome Compression via Protein Domain Compositions
Morihiro Hayashida
19:00 - 21:00 Dinner/Discussions

Contact

Tony Ribeiro: tony_ribeiro at nii.ac.jp

Webmaster: Tony Ribeiro (E-mail tony_ribeiro at nii.ac.jp)